Category Archives: Citation

Complete genome sequence of Lutibacter profundi LP1Tisolated from an Arctic deep-sea hydrothermal vent system

Posted on February 25, 2017 by Alex

January 2017 Authors: Juliane Wissuwa, Sven Le Moine Bauer, Ida Helene Steen, and Runar Stokke Info: Scientists from the University of Bergen used PacBio sequencing to produce a complete genome assembly for Lutibacter profundi LP1T, an extremophile isolated from a … more »

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Antibiotic discovery throughout the Small World Initiative: A molecular strategy to identify biosynthetic gene clusters involved in antagonistic activity

Posted on February 25, 2017 by Alex

January 2017 Authors: Elizabeth Davis, Tyler Sloan, Krista Aurelius, Angela Barbour, et al. Info: Through a citizen science program, college students analyzed 77 soil-derived bacteria to promote genetic characterization and antibiotic discovery for the fight against drug-resistant pathogens. They chose … more »

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Genomic and transcriptomic resources for assassin flies including the complete genome sequence of Proctacanthus coquilletti (Insecta: Diptera: Asilidae) and 16 representative transcriptomes

Posted on February 25, 2017 by Alex

January 2017 Authors: Rebecca B. Dikow, Paul B. Frandsen, Mauren Turcatel, and Torsten Dikow Info: Researchers at the Smithsonian Institution published a high-quality draft genome, 16 transcriptomes, and a time-calibrated phylogeny for the assassin fly. They also include bioinformatics tools … more »

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Pharmacologic activation of estrogen receptor β increases mitochondrial function, energy expenditure, and brown adipose tissue

Posted on February 25, 2017 by Alex

January 2017 Authors: Suriyan Ponnusamy, Quynh T. Tran, Innocence Harvey, Heather S. Smallwood, et al. Info: Scientists in Memphis, Tenn., studied obesity in mice, finding that estrogen receptor β and its ligands had a strong anti-obesity effect, reducing weight gain … more »

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Genomics-Based Marker Discovery and Diagnostic Assay Development for Wheat Blast

Posted on February 25, 2017 by Alex

January 2017 Authors: Michael L. Pieck, Amy Ruck, Mark L. Farman, Gary L. Peterson, James P. Stack, Barbara Valent, and Kerry F. Pedley Info: Plant researchers published this look at Magnaporthe oryzae Triticum pathotype, the pathogen responsible for wheat blast … more »

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Comprehensive evaluation of extracellular small RNA isolation methods from serum in high throughput sequencing

Posted on February 25, 2017 by Alex

January 2017 Authors: Yan Guo, Kasey Vickers, Yanhua Xiong, Shilin Zhao, Quanhu Sheng, Pan Zhang, Wanding Zhou and Charles R. Flynn Info: Scientists from Vanderbilt University and Van Andel Research Institute compared methods for isolating circulating extracellular small non-coding RNAs. … more »

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Whole Genome Amplification and Reduced-Representation Genome Sequencing of Schistosoma japonicum Miracidia

Posted on February 25, 2017 by Alex

January 2017 Authors: Jonathan A. Shortt, Daren C. Card, Drew R. Schield, Yang Liu, Bo Zhong, Todd A. Castoe, Elizabeth J. Carlton, and David D. Pollock Info: Researchers used ddRAD-seq to study the schistosome species S. japonicum miracidia, finding that … more »

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MicroRNA biomarkers of pancreatic injury in a canine model

Posted on February 25, 2017 by Alex

January 2017 Authors: Rodney Rouse, Barry Rosenzweig, Katie Shea, Alan Knapton, Sharron Stewart, Lin Xu, Ashok Chockalingam, Leah Zadrozny, and Karol Thompson Info: FDA scientists report results of studying five pancreas-enriched microRNAs as potential biomarkers for pancreatic injury. They used … more »

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QseC inhibition as an antivirulence approach for colitis-associated bacteria

Posted on February 6, 2017 by Alex

January 2017 Authors: Michelle G. Rooks, Patrick Veiga, Analise Z. Reeves, Sydney Lavoie, et al. Info: In this paper, scientists from Harvard and other institutions describe a study of quorum-sensing regulators in E. coli as a possible means of reducing … more »

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Targeted capture and sequencing of gene-sized DNA molecules

Posted on January 9, 2017 by Alex

December 2016 Authors: Michael Giolai, Pirita Paajanen, Walter Verweij, Lawrence Percival-Alwyn, et al. Info: Scientists adapted the RenSeq capture method for long-read PacBio sequencing, optimizing the method through improved shearing, size selection, and PCR amplification. They used SageELF extensively to … more »

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