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Category Archives: Citation
Defining an olfactory receptor function in airway smooth muscle cells
December 2016 Authors: William H. Aisenberg, Jessie Huang, Wanqu Zhu, Premraj Rajkumar, et al. Info: Scientists at Johns Hopkins University, Rutgers, and other institutions teamed up to study receptors in airway smooth muscle cells that appear to play a role … more »
Posted in Citation
Tagged HiSeq, Pippin Prep, RNA-seq
Comments Off on Defining an olfactory receptor function in airway smooth muscle cells
The mammalian LINC complex regulates genome transcriptional responses to substrate rigidity
December 2016 Authors: Samer G. Alam, Qiao Zhang, Nripesh Prasad, Yuan Li, Srikar Chamala, et al. Info: Researchers from the HudsonAlpha Institute, the University of Florida, and other institutions studied the role of rigidity in the extracellular matrix, finding that … more »
Posted in Citation
Tagged microRNA, Pippin Prep
Comments Off on The mammalian LINC complex regulates genome transcriptional responses to substrate rigidity
Selective Y centromere inactivation triggers chromosome shattering in micronuclei and repair by non-homologous end joining
December 2016 Authors: Peter Ly, Levi S. Teitz, Dong H. Kim, Ofer Shoshani, Helen Skaletsky, Daniele Fachinetti, David C. Page, and Don W. Cleveland Info: Scientists report developing a strategy to examine what happens when chromosomes do not segregate properly. … more »
Susceptibility to Aminoglycosides and Distribution of aph and aac(3)-XI Genes among Corynebacterium striatum Clinical Isolates
December 2016 Authors: Jesús Navas, Marta Fernández-Martínez, Carlos Salas, María Eliecer Cano, Luis Martínez-Martínez Info: Scientists in Spain analyzed several strains of the pathogen Corynebacterium striatum and found that many were resistant to drugs most commonly used to treat these … more »
Posted in Citation
Tagged BluePippin, MiSeq
Comments Off on Susceptibility to Aminoglycosides and Distribution of aph and aac(3)-XI Genes among Corynebacterium striatum Clinical Isolates
Single-Molecule Sequencing (PacBio) of the Staphylococcuscapitis NRCS-A Clone Reveals the Basis of Multidrug Resistance and Adaptation to the Neonatal Intensive Care Unit Environment
December 2016 Authors: Patrícia MartinsSimões, HajarLemriss, YannDumont, SanâaLemriss, et al. Info: Scientists in France and Morocco fully sequenced the genome and accessory genome of a Staphylococcus capitis clone that has proven resistant to many drugs and is particularly detrimental to … more »
Posted in Citation
Tagged BluePippin, PacBio
Comments Off on Single-Molecule Sequencing (PacBio) of the Staphylococcuscapitis NRCS-A Clone Reveals the Basis of Multidrug Resistance and Adaptation to the Neonatal Intensive Care Unit Environment
Generation of Full-Length Class I Human Leukocyte Antigen Gene Consensus Sequences for Novel Allele Characterization
December 2016 Authors: Peter M. Clark, Jamie L. Duke, Deborah Ferriola, Valia Bravo-Egana, Tunde Vago, Aniqa Hassan, Anna Papazoglou, and Dimitri Monos Info: Scientists from The Children’s Hospital of Philadelphia evaluated an NGS-based HLA typing kit from Omixon. They analyzed … more »
Posted in Citation
Tagged HLA, MiSeq, Pippin Prep
Comments Off on Generation of Full-Length Class I Human Leukocyte Antigen Gene Consensus Sequences for Novel Allele Characterization
Plasmids from Shiga Toxin-Producing Escherichia coli Strains with Rare Enterohemolysin Gene (ehxA) Subtypes Reveal Pathogenicity Potential and Display a Novel Evolutionary Path
November 2016 Authors: Sandra C. Lorenz, Steven R. Monday, Maria Hoffmann, Markus Fischer and Julie A. Kase Info: Scientists from the US FDA and the University of Hamburg used PacBio sequencing to characterize plasmids associated with heightened virulence in Shiga … more »
Posted in Citation
Tagged BluePippin, PacBio
Comments Off on Plasmids from Shiga Toxin-Producing Escherichia coli Strains with Rare Enterohemolysin Gene (ehxA) Subtypes Reveal Pathogenicity Potential and Display a Novel Evolutionary Path
Very Short Mitochondrial DNA Fragments and Heteroplasmy in Human Plasma
November 2016 Authors: Ruoyu Zhang, Kiichi Nakahira, Xiaoxian Guo, Augustine M.K. Choi & Zhenglong Gu Info: Scientists at Cornell University studied cell-free mitochondrial DNA found in plasma samples collected from sepsis patients. Along the way, they optimized sample prep protocols … more »
Posted in Citation
Tagged BluePippin
Comments Off on Very Short Mitochondrial DNA Fragments and Heteroplasmy in Human Plasma
Depletion of tRNA-halves enables effective small RNA sequencing of low-input murine serum samples
November 2016 Authors: Alan Van Goethem, Nurten Yigit, Celine Everaert, Myrthala Moreno-Smith, et al. Info: Scientists at Ghent University and Baylor College of Medicine evaluated protocols for depleting abundant RNAs from blood and serum samples to improve the ability to … more »
Posted in Citation
Tagged microRNA, Pippin Prep
Comments Off on Depletion of tRNA-halves enables effective small RNA sequencing of low-input murine serum samples
Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome
November 2016 Authors: Eileen P Hamilton, Aurélie Kapusta, Piroska E Huvos, Shelby L Bidwell, et al. Info: A large team of scientists in Asia, Europe, and the U.S. collaborated for this study of Tetrahymena thermophile, for which they produced a complete sequence assembly. They … more »
Posted in Citation
Tagged HiSeq, Pippin Prep
Comments Off on Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome