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- A restriction enzyme reduced representation sequencing approach for low-cost, high-throughput metagenome profiling
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Category Archives: Citation
A long-read RNA-seq approach to identify novel transcripts of very large genes
July 2020 Authors: Prech Uapinyoying, Jeremy Goecks, Susan M. Knoblach, Karuna Panchapakesan, Carsten G. Bonnemann, Terence A. Partridge, Jyoti K. Jaiswal, and Eric P. Hoffman Info: Scientists researching muscular disorders present a method for studying gene expression of large RNA … more »
Posted in Citation
Tagged BluePippin, iso-seq, PacBio
Comments Off on A long-read RNA-seq approach to identify novel transcripts of very large genes
Fully phased sequence of a diploid human genome determined de novo from the DNA of a single individual
July 2020 Authors: Ilya Soifer , Nicole L. Fong, Nelda Yi, Andrea T. Ireland, Irene Lam, Matthew Sooknah, Jonathan S. Paw, Paul Peluso, Gregory T. Concepcion, David Rank, Alex R. Hastie, 5 Vladimir Jojic, J. Graham Ruby, David Botstein, Margaret … more »
Posted in Citation
Tagged BluePippin, High Pass, PacBio
Comments Off on Fully phased sequence of a diploid human genome determined de novo from the DNA of a single individual
Highly accurate long-read HiFi sequencing data for five complex genomes
May 2020 Authors: Ting Hon, Kristin Mars, Greg Young, Yu-Chih Tsai, Joseph W. Karalius, Jane M. Landolin, Nicholas Maurer, David Kudrna, Michael A. Hardigan, Cynthia C. Steiner, Steven J. Knapp, Doreen Ware, Beth Shapiro, Paul Peluso, David R. Rank Info: … more »
Posted in Citation
Tagged BluePippin, HiFi, PacBio, SageELF
Comments Off on Highly accurate long-read HiFi sequencing data for five complex genomes
Decimated little brown bats show potential for adaptive change
April 2020 Authors: Giorgia G. Auteri & L. Lacey Knowles Info: Little brown bats have experienced a 90% population decline due to fungal pathogen that causes a disease, white-nose syndrome. The authors used ddRADseq to compare surviving and non-surviving individuals. … more »
Posted in Citation
Tagged ddRADseq, Pippin Prep
Comments Off on Decimated little brown bats show potential for adaptive change
A restriction enzyme reduced representation sequencing approach for low-cost, high-throughput metagenome profiling
April 2020 Authors: Melanie K. Hess, Suzanne J. Rowe, Tracey C. Van Stijn, Hannah M. Henry, Sharon M. Hickey, Rudiger Brauning, Alan F. McCulloch, Andrew S. Hess, Michelle R. Kirk, Sandeep Kumar, Cesar Pinares-Patiño, Sandra Kittelmann, Graham R. Wood, Peter … more »
Posted in Citation
Tagged GBS, Pippin Prep
Comments Off on A restriction enzyme reduced representation sequencing approach for low-cost, high-throughput metagenome profiling
Inhalation of lung spheroid cell secretome and exosomes promotes lung repair in pulmonary fibrosis
February 2020 Authors: Phuong-Uyen C. Dinh, Dipti Paudel, Hayden Brochu, Kristen D. Popowski, M. Cyndell Gracieux, Jhon Cores, Ke Huang, M. Taylor Hensley, Erin Harrell, Adam C. Vandergriff, Arianna K. George, Raina T. Barrio, Shiqi Hu, Tyler A. Allen, Kevin … more »
Posted in Citation
Tagged microRNA, Pippin Prep
Comments Off on Inhalation of lung spheroid cell secretome and exosomes promotes lung repair in pulmonary fibrosis
A spontaneous complex structural variant in rcan-1 increases exploratory behavior and laboratory fitness of Caenorhabditis elegans
February 2020 Authors: Yuehui Zhao, Lijiang Long, Jason Wan, Shweta Biliya, Shannon C. Brady, Daehan Lee, Akinade Ojemakinde, Erik C. Andersen, Fredrik O. Vannberg, Hang Lu, Patrick T. McGrath Info: Researchers studying genetic adaptive changes using C. elegans recombinant inbred … more »
Posted in Citation
Tagged BluePippin, oxford nanopore
Comments Off on A spontaneous complex structural variant in rcan-1 increases exploratory behavior and laboratory fitness of Caenorhabditis elegans
Amplification-free long read sequencing reveals unforeseen CRISPR-Cas9 off-target activity
February 2020 Authors: Ida Höijer, Josefin Johansson, Sanna Gudmundsson, Chen-Shan Chin, Ignas Bunikis, Susana Häggqvist, Anastasia Emmanouilidou, Maria Wilbe, Marcel den Hoed, Marie-Louise Bondeson, Lars Feuk, Ulf Gyllensten, Adam Ameur Info: In this preprint, the authors propose a method for … more »
Capture of complete ciliate chromosomes in single sequencing reads reveals widespread chromosome isoforms
December 2019 Authors: Kelsi A. Lindblad, Jananan S. Pathmanathan, Sandrine Moreira, John R. Bracht, Robert P. Sebra, Elizabeth R. Hutton & Laura F. Landweber Info: Researchers sequenced the whole genome of Oxytricha trifallax, a model protozoan ciliate, using long read … more »
Posted in Citation
Tagged BluePippin, PacBio
Comments Off on Capture of complete ciliate chromosomes in single sequencing reads reveals widespread chromosome isoforms
Comparison of mitochondrial DNA variants detection using short- and long-read sequencing
August 2019 Authors: Ahmed N. Alkanaq, Kohei Hamanaka, Futoshi Sekiguchi, Masataka Taguri, Atsushi Takata, Noriko Miyake, Satoko Miyatake, Takeshi Mizuguchi, Naomichi Matsumot Info: The genotypes of mitochondrial DNA variants are compared using both short-read (Illumina Hi-SeqX10) and long-read (PacBio Sequel) … more »
Posted in Citation
Tagged BluePippin, mtDNA, PacBio
Comments Off on Comparison of mitochondrial DNA variants detection using short- and long-read sequencing