Tag Archives: High Pass

Nanopore adaptive sampling: a tool for enrichment of low abundance species in metagenomic samples

May 2021 Authors: Samuel Martin, Darren Heavens, Yuxuan Lan, Samuel Horsfield, Matthew D Clark, Richard M Leggett Info: Oxford Nanopore adaptive sampling is a real-time sequencing method with which analysis software identifies several hundred sequence bases as they pass through … more »

Posted in Citation | Tagged , , | Comments Off on Nanopore adaptive sampling: a tool for enrichment of low abundance species in metagenomic samples

Chromosomal rearrangements but no change of genes and transposable elements repertoires in an invasive forest-pathogenic fungus

Authors: Arthur Demené , Benoît Laurent , Sandrine Cros-Arteil , Christophe Boury , Cyril Dutech Info: The authors present a high-quality de novo genome assembly of Cryphonectria parasitica, and invasive fungus that causes chestnut blight, using Oxford Nanopore and Illumina … more »

Posted in Citation | Tagged , , , , , | Comments Off on Chromosomal rearrangements but no change of genes and transposable elements repertoires in an invasive forest-pathogenic fungus

Fully phased sequence of a diploid human genome determined de novo from the DNA of a single individual

July 2020 Authors: Ilya Soifer , Nicole L. Fong, Nelda Yi, Andrea T. Ireland, Irene Lam, Matthew Sooknah, Jonathan S. Paw, Paul Peluso, Gregory T. Concepcion, David Rank, Alex R. Hastie, 5 Vladimir Jojic, J. Graham Ruby, David Botstein, Margaret … more »

Posted in Citation | Tagged , , | Comments Off on Fully phased sequence of a diploid human genome determined de novo from the DNA of a single individual

What’s the difference between the 4-10 Kb vs2 and 6-10 Kb vs3 high pass protocols?

Customers may have noticed two very similar cassette definitions; 0.75%DF Marker S1 high-pass 4-10kb vs2 and 0.75%DF Marker S1 High-Pass 6-10kb vs3. Since these two protocols cover a similar range, they might seem a bit redundant. However, both of these … more »

Posted in Blog, Tips | Tagged , , | Comments Off on What’s the difference between the 4-10 Kb vs2 and 6-10 Kb vs3 high pass protocols?

RAD-seq, High-Pass Sizing in Sunny San Diego

We are shaking off this northeast winter and heading out to San Diego for the 25th annual International Plant and Animal Genome meeting! This event is always a great way to kick off the year, surrounded by cutting-edge science and … more »

Posted in Blog | Tagged , , , , | Comments Off on RAD-seq, High-Pass Sizing in Sunny San Diego

Analysis of tandem gene copies in maize chromosomal regions reconstructed from long sequence reads

July 2016 Authors: Jiaqiang Dong, Yaping Feng, Dibyendu Kumar, Wei Zhang, Tingting Zhu, Ming-Cheng Luo, and Joachim Messing Info: Scientists from Rutgers University and the University of California, Davis, analyzed copy number variation in the highly repetitive maize genome using … more »

Posted in Citation | Tagged , , | Comments Off on Analysis of tandem gene copies in maize chromosomal regions reconstructed from long sequence reads

Complete telomere-to-telomere de novo assembly of the Plasmodium falciparum genome through long-read (>11 kb), single molecule, real-time sequencing

June 2016 Authors: Shruthi Sridhar Vembar, Matthew Seetin, Christine Lambert, Maria Nattestad, Michael C. Schatz, Primo Baybayan, Artur Scherf, and Melissa Laird Smith Info: Scientists in France and the US used PacBio sequencing to characterize the AT-rich genome of this … more »

Posted in Citation | Tagged , , | Comments Off on Complete telomere-to-telomere de novo assembly of the Plasmodium falciparum genome through long-read (>11 kb), single molecule, real-time sequencing