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Tag Archives: Illumina
Genome Editing Shows Potential for Shrinking Repeat Expansions
Several diseases, many of them involving neurological symptoms, have been linked to expansions of trinucleotide repeat sequences. These repeat expansion disorders include Fragile X syndrome, Huntington’s disease, and various forms of epilepsy and ataxia. In Fragile X, for example, a … more »
Posted in Blog
Tagged DNA Sequencing, Illumina, Pippin Prep
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Quality control of next-generation sequencing data without a reference
May 2014 Authors: Urmi H Trivedi, Timothée Cézard, Stephen Bridgett, Anna Montazam, Jenna Nichols, Mark Blaxter, and Karim Gharbi Info: In this paper published in Frontiers in Genetics, scientists at the University of Edinburgh show that it is possible to … more »
Posted in Citation
Tagged BluePippin, DNA Sequencing, Illumina
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Highly Specific Contractions of a Single CAG/CTG Trinucleotide Repeat by TALEN in Yeast
April 2014 Authors: Guy-Franck Richard, David Viterbo, Varun Khanna, Valentine Mosbach, Lauriane Castelain, and Bernard Dujon Info: Researchers in France used a TALEN to introduce a double-strand break in a CAG/CCTG repeat in yeast cells, finding that doing so deleted … more »
Posted in Citation
Tagged DNA Sequencing, Illumina, Pippin Prep
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The emerging biofuel crop Camelina sativa retains a highly undifferentiated hexaploid genome structure
April 2014 Authors: Sateesh Kagale, Chushin Koh, John Nixon, Venkatesh Bollina, Wayne E. Clarke, Reetu Tuteja, Charles Spillane, Stephen J. Robinson, Matthew G. Links, Carling Clarke, Erin E. Higgins, Terry Huebert, Andrew G. Sharpe & Isobel A.P. Parkin Info: Scientists … more »
Posted in Citation
Tagged DNA Sequencing, Illumina, Pippin Prep
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A first genetic map of date palm (Phoenix dactylifera) reveals long-range genome structure conservation in the palms
April 2014 Authors: Lisa S Mathew, Manuel Spannagl, Ameena Al-Malki, Binu George, Maria F Torres, Eman K Al-Dous, Eman K Al-Azwani, Emad Hussein, Sweety Mathew, Klaus FX Mayer, Yasmin Ali Mohamoud, Karsten Suhre and Joel A Malek Info: The first … more »
Posted in Citation
Tagged DNA Sequencing, genotyping, Illumina, Pippin Prep
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DNA methylation is required for the control of stem cell differentiation in the small intestine
March 2014 Authors: Karyn L. Sheaffer, Rinho Kim, Reina Aoki, Ellen N. Elliott, Jonathan Schug, Lukas Burger, Dirk Schubeler, and Klaus H. Kaestner Info: Scientists in Switzerland and Pennsylvania sought to understand the role of methylation in stem cell-directed regeneration … more »
Posted in Citation
Tagged DNA Sequencing, Illumina, Pippin Prep
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SASI-Seq: sample assurance Spike-Ins, and highly differentiating 384 barcoding for Illumina sequencing
February 2014 Authors: Michael A Quail, Miriam Smith, David Jackson, Steven Leonard, Thomas Skelly, Harold P Swerdlow, Yong Gu, and Peter Ellis Info: In this paper, scientists from the Wellcome Trust Sanger Institute and Frederick National Laboratory for Cancer Research … more »
Posted in Citation
Tagged Illumina, Pippin Prep
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Glutamine methylation in histone H2A is an RNA-polymerase-I-dedicated modification
January 2014 Authors: Peter Tessarz, Helena Santos-Rosa, Sam C. Robson, Kathrine B. Sylvestersen, Christopher J. Nelson1, Michael L. Nielsen and Tony Kouzarides Info: The authors describe a new class of histone modification, methylation of glutamine, occurring on yeast histone H2A. … more »
Posted in Citation
Tagged ChIP-Seq, Illumina, MiSeq, Pippin Prep
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Variant calling in low-coverage whole genome sequencing of a Native American population sample
January 2014 Authors: Chris Bizon, Michael Spiegel, Scott A Chasse, Ian R Gizer, Yun Li, Ewa P Malc, Piotr A Mieczkowski, Josh K Sailsbery, Xiaoshu Wang, Cindy L Ehlers and Kirk C Wilhelmsen Info: Scientists from the University of North … more »
Posted in Citation
Tagged genotyping, Illumina, Pippin Prep
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Improved Protocols for Illumina Sequencing
October 2013 Authors: Iraad F. Bronner, Michael A. Quail, Daniel J. Turner, and Harold Swerdlow Info: A comprehensive overview of the state-of-the state of Illumina sequencing, from the Wellcome Trust Sanger Institute and Oxford Nanopore Technologies. The value of narrow … more »
Posted in Citation
Tagged DNA Sequencing, Featured, Illumina, Pippin Prep, Pippin System
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