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Category Archives: Citation
Transposon insertion profiling by sequencing (TIPseq) for mapping LINE-1 insertions in the human genome
March 2019 Authors: Jared P. Steranka, Zuojian Tang, Mark Grivainis, Cheng Ran Lisa Huang, Lindsay M. Payer, Fernanda O. R. Rego, Thiago Luiz Araujo Miller, Pedro A. F. Galante, Sitharam Ramaswami, Adriana Heguy, David Fenyö, Jef D. Boeke & Kathleen … more »
Posted in Citation
Tagged new method, Pippin Prep, TIPseq, transposon
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Identification of whole blood mRNA and microRNA biomarkers of tissue damage and immune function resulting from amphetamine exposure or heat stroke in adult male rats
February 2019 Authors: Luısa Camacho, Camila S. Silva, Joseph P. Hanig, Robert P. Schleimer, Nysia I. George, John F. Bowyer Info: A report from the USDA and others evaluate the effect of amphetamine and methamphetamine toxicity on immune systems and … more »
Iso-Seq Allows Genome-Independent Transcriptome Profiling of Grape Berry Development
March 2019 Authors: Andrea Minio, Mélanie Massonnet, Rosa Figueroa-Balderas, Amanda M. Vondras, Barbara Blanco-Ulate, and Dario Cantu Info: Researchers used PacBio’s Iso-Seq method to sequence full-length cDNA transcripts from ripening Cabernet Savignon berries resulting in 1,5000 cultivar-specific genes. The authors … more »
Posted in Citation
Tagged BluePippin, iso-seq, isoseq
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Cancer stem cell–associated miRNAs serve as prognostic biomarkers in colorectal cancer
March 2019 Authors: Shusuke Toden, Shigeyasu Kunitoshi, Jacob Cardenas, Jinghua Gu, Elizabeth Hutchins, Kendall Van Keuren-Jensen, Hiroyuki Uetake, Yuji Toiyama, and Ajay Goel Info: This study evaluates cancer stems cells (CSC) which resist chemotherapy agents and have high tumor initiation … more »
Gestational jet lag predisposes to later-life skeletal and cardiac disease
February 2019 Authors: Inês Chaves, Bram van der Eerden, Ruben Boers, Joachim Boers, Astrid A. Streng, Yanto Ridwan, Marijke Schreuders-Koedam, Marijn Vermeulen, Ingrid van der Pluijm, Jeroen Essers, Joost Gribnau, Irwin K. M. Reiss & Gijsbertus T. J. van der … more »
Posted in Citation
Tagged CpG island, MED-seq, methylation, PippinHT
Comments Off on Gestational jet lag predisposes to later-life skeletal and cardiac disease
Enhanced detection of circulating tumor DNA by fragment size analysis
November 2018 Authors: Florent Mouliere et al. Info: This study from Cancer Research UK and a large team of collaborators is a continuation of work evaluating circulating tumor DNA (ctDNA) and the significance of sub-167 base pair cell-free DNA as … more »
Posted in Citation
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Small-seq for single-cell small-RNA sequencing
September 2018 Authors: Michael Hagemann-Jensen, Ilgar Abdullayev, Rickard Sandberg and Omid R Faridani Info: A new protocol from researchers at the Karolinska Institutet and the Ludwig Institute for Cancer Research outline a method for making small RNA sequencing libraries from … more »
Posted in Citation
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Genomic and epidemiological monitoring of yellow fever virus transmission potential
August 2018 Authors: N.R. Faria, et al. Info: A large collaboration between international and Brazilian researchers used a suite of epidemiological, spatial, and genomic approaches to characterize Yellow Fever virus transmission in Brazil. The study potentially establishes a framework for … more »
Posted in Citation
Tagged Pippin Prep, RNA-seq
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Highly sensitive detection of mutations in CHO cell recombinant DNA using multi‐parallel single molecule real‐time DNA sequencing
June 2018 Authors: Joseph Cartwright, Karin Anderson, Joseph Longworth, Philip Lobb, and David James Info: To improve the quantitative assessment of recombinant DNA in cell lines, University of Sheffield scientists and collaborators developed a PacBio-based method for high-throughput rDNA sequence … more »
Posted in Citation
Tagged BluePippin, PacBio
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A Whole Genome Assembly of the Horn Fly, Haematobia irritans, and Prediction of Genes with Roles in Metabolism and Sex Determination
May 2018 Authors: Kranti Konganti, Felix Guerrero, Faye Schilkey, Peter Ngam, et al. Info: Researchers sequenced, assembled, and annotated the genome of horn fly, a blood-feeding insect that preys on cattle. The 1.14 Gb assembly shows the fly is most … more »
Posted in Citation
Tagged BluePippin, Illumina
Comments Off on A Whole Genome Assembly of the Horn Fly, Haematobia irritans, and Prediction of Genes with Roles in Metabolism and Sex Determination