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- Leveraging the power of long reads for targeted sequencing
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Tag Archives: Pippin Prep
Integrated analysis of miRNAs and mRNAs in thousands of single cells
January 2025 Authors: Jia Li, Jing Tian, Tao Cai Abstract: “The simultaneous sequencing of multiple types of biomolecules can facilitate understanding various forms of regulation occurring in cells. Cosequencing of miRNA and mRNA at single-cell resolution is challenging, and to … more »
Posted in Citation
Tagged miRNA, mRNA, Pippin Prep, single cell sequencing
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Significance of HLA in the development of Graves’ orbitopathy
January 2023 Authors: Magdalena Stasiak, Katarzyna Zawadzka-Starczewska, Bogusław Tymoniuk, Bartłomiej Stasiak, Andrzej Lewiński Abstract: “Graves’ disease (GD), similarly to most autoimmune disease, is triggered by environmental factors in genetically predisposed individuals. Particular HLA alleles increase or decrease GD risk. No … more »
Posted in Citation
Tagged Graves Disease, HLA, MHC, Pippin Prep
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Optimising ddRAD sequencing for population genomic studies with ddgRADer
October 2022 Authors: Aparna Lajmi, Felix Glinka, Eyal Privman Info: In this preprint, the authors describe an online webtool that they have developed for designing ddRAD-seq experiments. This webtool assists in the recommendation of restriction enzyme pairs and size-selection criteria. … more »
Posted in Citation
Tagged BluePippin, ddRADseq, Pippin Prep
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rDNA array length is a major determinant of replicative lifespan in budding yeast
April 2022 Authors: Manuel Hotz, Nathaniel H. Thayer, David G. Hendrickson, Elizabeth L. Schinski, Jun Xu, and Daniel E. Gottschling Info: The authors propose a new mechanism for aging and lifespan determination in budding yeast. The researchers “discovered a previously … more »
Posted in Citation
Tagged ATAC-seq, Pippin Prep
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Evaluating the analytical validity of circulating tumor DNA sequencing assays for precision oncology
April 2021 Authors: Multiple authors, the SEQC2 Oncopanel Sequencing Working Group Info: A multi-site and cross-platform evaluation of circulating tumor DNA (ctDNA) NGS assays was conducted by the SEQC2 Oncopanel Sequencing Working Group and reported on in this comprehensive study. … more »
Posted in Citation
Tagged cell-free DNA, circulation tumor DNA, ctDNA, Pippin Prep
Comments Off on Evaluating the analytical validity of circulating tumor DNA sequencing assays for precision oncology
Identifying the true number of specimens of the extinct blue antelope (Hippotragus leucophaeus)
Jan 2021 Authors: Elisabeth Hempel, Faysal Bibi, J. Tyler Faith, James S. Brink, Daniela C. Kalthoff, Pepijn Kamminga, Johanna L. A. Paijmans, Michael V. Westbury, Michael Hofreiter & Frank E. Zachos Info: In an effort to better understand the mechanisms … more »
Posted in Citation
Tagged Pippin Prep
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Decimated little brown bats show potential for adaptive change
April 2020 Authors: Giorgia G. Auteri & L. Lacey Knowles Info: Little brown bats have experienced a 90% population decline due to fungal pathogen that causes a disease, white-nose syndrome. The authors used ddRADseq to compare surviving and non-surviving individuals. … more »
Posted in Citation
Tagged ddRADseq, Pippin Prep
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A restriction enzyme reduced representation sequencing approach for low-cost, high-throughput metagenome profiling
April 2020 Authors: Melanie K. Hess, Suzanne J. Rowe, Tracey C. Van Stijn, Hannah M. Henry, Sharon M. Hickey, Rudiger Brauning, Alan F. McCulloch, Andrew S. Hess, Michelle R. Kirk, Sandeep Kumar, Cesar Pinares-Patiño, Sandra Kittelmann, Graham R. Wood, Peter … more »
Posted in Citation
Tagged GBS, Pippin Prep
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Inhalation of lung spheroid cell secretome and exosomes promotes lung repair in pulmonary fibrosis
February 2020 Authors: Phuong-Uyen C. Dinh, Dipti Paudel, Hayden Brochu, Kristen D. Popowski, M. Cyndell Gracieux, Jhon Cores, Ke Huang, M. Taylor Hensley, Erin Harrell, Adam C. Vandergriff, Arianna K. George, Raina T. Barrio, Shiqi Hu, Tyler A. Allen, Kevin … more »
Posted in Citation
Tagged microRNA, Pippin Prep
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Ingestible Osmotic Pill for In‐vivo Sampling of Gut Microbiome
July 2019 Authors: Hojatollah Rezaei Nejad, Bruno C. M. Oliveira, Aydin Sadeqi, Amin Dehkharghani, Ivanela Kondova Jan A. M. Langermans, Jeffrey S. Guasto, Saul Tzipori, Giovanni Widmer, Sameer R. Sonkusale Info: From Engineering and Nano Labs at Tufts University, and … more »
Posted in Citation
Tagged 16S, Amplicon, Illumina, Pippin Prep
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