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Tag Archives: BluePippin
Two stable variants of Burkholderia pseudomallei strain MSHR5848 express broadly divergent in vitro phenotypes associated with their virulence differences
February 2017 Authors: A. A. Shea, R. C. Bernhards, C. K. Cote, C. J. Chase, et al. Info: Scientists from the United States Army Medical Research Institute of Infectious Diseases compared two strains of Burkholderia pseudomallei to find variants that … more »
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Detection of individual ploidy levels with genotyping‐by‐sequencing (GBS) analysis
February 2017 Authors: Zachariah Gompert, Karen E. Mock Info: Utah State University researchers developed a statistical approach to detect low-level ploidy variants using genotyping data from a sequencing workflow. The method does not require prior ploidy information to function. An … more »
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Rapid genetic and morphologic divergence between captive and wild populations of the endangered Leon Springs pupfish, Cyprinodon bovinus
February 2017 Authors: Andrew N. Black, Heidi A. Seears, Christopher M. Hollenbeck, and Paul B. Samollow Info: Scientists studied members of two remaining populations of the endangered Leon Springs pupfish, one in a desert spring and the other in captivity. … more »
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De Novo Genome and Transcriptome Assembly of the Canadian Beaver (Castor canadensis)
February 2017 Authors: Si Lok, Tara A. Paton, Zhuozhi Wang, Gaganjot Kaur, et al. Info: Researchers in Toronto report a high-quality draft assembly of the 2.7 Gb beaver genome using SMRT Sequencing. They include an analysis of gene content, such … more »
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Complete genome sequence of Lutibacter profundi LP1Tisolated from an Arctic deep-sea hydrothermal vent system
January 2017 Authors: Juliane Wissuwa, Sven Le Moine Bauer, Ida Helene Steen, and Runar Stokke Info: Scientists from the University of Bergen used PacBio sequencing to produce a complete genome assembly for Lutibacter profundi LP1T, an extremophile isolated from a … more »
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Antibiotic discovery throughout the Small World Initiative: A molecular strategy to identify biosynthetic gene clusters involved in antagonistic activity
January 2017 Authors: Elizabeth Davis, Tyler Sloan, Krista Aurelius, Angela Barbour, et al. Info: Through a citizen science program, college students analyzed 77 soil-derived bacteria to promote genetic characterization and antibiotic discovery for the fight against drug-resistant pathogens. They chose … more »
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Genomic and transcriptomic resources for assassin flies including the complete genome sequence of Proctacanthus coquilletti (Insecta: Diptera: Asilidae) and 16 representative transcriptomes
January 2017 Authors: Rebecca B. Dikow, Paul B. Frandsen, Mauren Turcatel, and Torsten Dikow Info: Researchers at the Smithsonian Institution published a high-quality draft genome, 16 transcriptomes, and a time-calibrated phylogeny for the assassin fly. They also include bioinformatics tools … more »
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Tagged BluePippin, Illumina, RNA-seq
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Susceptibility to Aminoglycosides and Distribution of aph and aac(3)-XI Genes among Corynebacterium striatum Clinical Isolates
December 2016 Authors: Jesús Navas, Marta Fernández-Martínez, Carlos Salas, María Eliecer Cano, Luis Martínez-Martínez Info: Scientists in Spain analyzed several strains of the pathogen Corynebacterium striatum and found that many were resistant to drugs most commonly used to treat these … more »
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Single-Molecule Sequencing (PacBio) of the Staphylococcuscapitis NRCS-A Clone Reveals the Basis of Multidrug Resistance and Adaptation to the Neonatal Intensive Care Unit Environment
December 2016 Authors: Patrícia MartinsSimões, HajarLemriss, YannDumont, SanâaLemriss, et al. Info: Scientists in France and Morocco fully sequenced the genome and accessory genome of a Staphylococcus capitis clone that has proven resistant to many drugs and is particularly detrimental to … more »
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Plasmids from Shiga Toxin-Producing Escherichia coli Strains with Rare Enterohemolysin Gene (ehxA) Subtypes Reveal Pathogenicity Potential and Display a Novel Evolutionary Path
November 2016 Authors: Sandra C. Lorenz, Steven R. Monday, Maria Hoffmann, Markus Fischer and Julie A. Kase Info: Scientists from the US FDA and the University of Hamburg used PacBio sequencing to characterize plasmids associated with heightened virulence in Shiga … more »
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