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Tag Archives: BluePippin
isoCirc catalogs full-length circular RNA isoforms in human transcriptomes
January 2021 Authors: Ruijiao Xin, Yan Gao, Yuan Gao, Robert Wang, Kathryn E. Kadash-Edmondson, Bo Liu, Yadong Wang, Lan Lin & Yi Xing Info: The authors present a protocol, isoCirc, for the full-length sequence determination of circular RNAs. The method … more »
Posted in Citation
Tagged BluePippin, circRNA
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A long-read RNA-seq approach to identify novel transcripts of very large genes
July 2020 Authors: Prech Uapinyoying, Jeremy Goecks, Susan M. Knoblach, Karuna Panchapakesan, Carsten G. Bonnemann, Terence A. Partridge, Jyoti K. Jaiswal, and Eric P. Hoffman Info: Scientists researching muscular disorders present a method for studying gene expression of large RNA … more »
Posted in Citation
Tagged BluePippin, iso-seq, PacBio
Comments Off on A long-read RNA-seq approach to identify novel transcripts of very large genes
Fully phased sequence of a diploid human genome determined de novo from the DNA of a single individual
July 2020 Authors: Ilya Soifer , Nicole L. Fong, Nelda Yi, Andrea T. Ireland, Irene Lam, Matthew Sooknah, Jonathan S. Paw, Paul Peluso, Gregory T. Concepcion, David Rank, Alex R. Hastie, 5 Vladimir Jojic, J. Graham Ruby, David Botstein, Margaret … more »
Posted in Citation
Tagged BluePippin, High Pass, PacBio
Comments Off on Fully phased sequence of a diploid human genome determined de novo from the DNA of a single individual
Highly accurate long-read HiFi sequencing data for five complex genomes
May 2020 Authors: Ting Hon, Kristin Mars, Greg Young, Yu-Chih Tsai, Joseph W. Karalius, Jane M. Landolin, Nicholas Maurer, David Kudrna, Michael A. Hardigan, Cynthia C. Steiner, Steven J. Knapp, Doreen Ware, Beth Shapiro, Paul Peluso, David R. Rank Info: … more »
Posted in Citation
Tagged BluePippin, HiFi, PacBio, SageELF
Comments Off on Highly accurate long-read HiFi sequencing data for five complex genomes
A spontaneous complex structural variant in rcan-1 increases exploratory behavior and laboratory fitness of Caenorhabditis elegans
February 2020 Authors: Yuehui Zhao, Lijiang Long, Jason Wan, Shweta Biliya, Shannon C. Brady, Daehan Lee, Akinade Ojemakinde, Erik C. Andersen, Fredrik O. Vannberg, Hang Lu, Patrick T. McGrath Info: Researchers studying genetic adaptive changes using C. elegans recombinant inbred … more »
Posted in Citation
Tagged BluePippin, oxford nanopore
Comments Off on A spontaneous complex structural variant in rcan-1 increases exploratory behavior and laboratory fitness of Caenorhabditis elegans
Capture of complete ciliate chromosomes in single sequencing reads reveals widespread chromosome isoforms
December 2019 Authors: Kelsi A. Lindblad, Jananan S. Pathmanathan, Sandrine Moreira, John R. Bracht, Robert P. Sebra, Elizabeth R. Hutton & Laura F. Landweber Info: Researchers sequenced the whole genome of Oxytricha trifallax, a model protozoan ciliate, using long read … more »
Posted in Citation
Tagged BluePippin, PacBio
Comments Off on Capture of complete ciliate chromosomes in single sequencing reads reveals widespread chromosome isoforms
Comparison of mitochondrial DNA variants detection using short- and long-read sequencing
August 2019 Authors: Ahmed N. Alkanaq, Kohei Hamanaka, Futoshi Sekiguchi, Masataka Taguri, Atsushi Takata, Noriko Miyake, Satoko Miyatake, Takeshi Mizuguchi, Naomichi Matsumot Info: The genotypes of mitochondrial DNA variants are compared using both short-read (Illumina Hi-SeqX10) and long-read (PacBio Sequel) … more »
Posted in Citation
Tagged BluePippin, mtDNA, PacBio
Comments Off on Comparison of mitochondrial DNA variants detection using short- and long-read sequencing
Structural variants identified by Oxford Nanopore PromethION sequencing of the human genome
June 2019 Authors: De Coster Wouter, De Rijk Peter, De Roeck Arne, De Pooter Tim, D’Hert Svenn, Strazisar Mojca, Kristel Sleegers and Van Broeckhoven Christine Info: Researchers from VIB Center for Molecular Neurology, Antwerp Belgium and University of Antwerp assess … more »
Posted in Citation
Tagged BluePippin, nanopore
Comments Off on Structural variants identified by Oxford Nanopore PromethION sequencing of the human genome
Effects of 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) on the differentiation of embryonic stem cells towards pancreatic lineage and pancreatic beta cell function
May 2019 Authors: John A. Kubi, Andy C.H. Chen, Sze Wan Fong, Keng Po Lai, Chris K.C. Wong, William S.B. Yeung, Kai Fai Lee, Yin Lau Lee Info: From the University of Hong Kong and Hong Kong Baptist University, this … more »
Posted in Citation
Tagged bisulfite sequencing, BluePippin
Comments Off on Effects of 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) on the differentiation of embryonic stem cells towards pancreatic lineage and pancreatic beta cell function
Sequencing of human genomes with nanopore technology
April 2019 Authors: Rory Bowden, Robert W. Davies, Andreas Heger, Alistair T. Pagnamenta, Mariateresa de Cesare, Laura E. Oikkonen, Duncan Parkes, Colin Freema, Fatima Dhalla, Smita Y. Patel, Niko Popitsch, Camilla L.C. Ip, Hannah E. Roberts, Silvia Salatino, Helen Lockstone, … more »
Posted in Citation
Tagged BluePippin, ONT, oxford nanopore, wgs
Comments Off on Sequencing of human genomes with nanopore technology