SimRAD: a R package for simulation-based prediction of the number of loci expected in RADseq and similar genotyping by sequencing approaches

May 2014 (epub ahead of print)

Olivier Lepais and Jason T Weir

This article from Molecular Ecology Resources describes a new software tool designed to help scientists optimize their double-digest RADseq (ddRADseq) experiments by accurately estimating the number of loci generated by a particular method. The tool uses a reference genome to approximate the organism of interest and predicts the number of loci for various protocols, such as tight versus wide size selection with the Pippin Prep.

Molecular Ecology Resources 2014


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