SimRAD: a R package for simulation-based prediction of the number of loci expected in RADseq and similar genotyping by sequencing approaches

May 2014 (epub ahead of print)

Authors:
Olivier Lepais and Jason T Weir

Info:
This article from Molecular Ecology Resources describes a new software tool designed to help scientists optimize their double-digest RADseq (ddRADseq) experiments by accurately estimating the number of loci generated by a particular method. The tool uses a reference genome to approximate the organism of interest and predicts the number of loci for various protocols, such as tight versus wide size selection with the Pippin Prep.

Citation:
Molecular Ecology Resources 2014

doi:10.1111/1755-0998.12273

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